rs222096666 SNP Detail

Summary

• ID
  rs222096666
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55251840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAATTCAAG ATAGAAAAAG GATTACTCTT
  TTTTGCTTaa aaaaaaaaaa caaaaaacaa aaaacaaaaa aaCAATCACT TTTAtgtatg
  cctatgtctg tatataggga agtcagaagg aactaaaatt cccctggggc tggagttaaa
  R
  gtagttgtga gctgtcttgt ctgggtgctg ggaatggaac gttggtcatc tgcaagaata
  atatgtgctc ttggccactg actgagccat cgctccagcc ccGTTTTCAt tttgtttatt
  gagatgggat ctcacaatgt agaccagact                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324641562	CHEV_14_55633220	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222096666					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55251840 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	251 bp proximal
Gm63342	predicted gene, 63342	1169 bp downstream
Gm63347	predicted gene, 63347	within coordinates
Ngdn	neuroguidin, EIF4E binding protein	1071 bp upstream
Rr369830	regulatory region 369830	702 bp upstream
Rr369831	regulatory region 369831	921 bp upstream
Rr404108	regulatory region 404108	within coordinates
Rr492392	regulatory region 492392	581 bp proximal
Rr492393	regulatory region 492393	763 bp proximal
Rr492394	regulatory region 492394	1082 bp proximal
Rr492395	regulatory region 492395	1408 bp proximal
Rr492396	regulatory region 492396	1775 bp proximal
Tssr125743	transcription start site region 125743	1147 bp upstream