rs222098751 SNP Detail

Summary

• ID
  rs222098751
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141547756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATAGTTGG GATCTTAAGT
  ACGCACAACC ACACCTGGCT TCTTTCACCG GTTCTGAGGA CATGTGTCCC CATGCTTGCA
  AGGTAAGCTG TTTACCAACT GAGTTCCTCA ACATCCCCAC CTCATTATCA TTCCTTAATC
  ACAGTGTATC ATGCTCTATA AACGGGCCAG TCCTCACAGT GATATTCATT CCTGTTTGGC
  R
  AAGGGGACAT GGACGACTGC TCTAATTATA CTTGCTTAAC GCTTTCCCGG GTCCAAAGCA
  CTTCAGATAT ATCTGTGACC ATCACCACAG ACCTTATACT TTACAAATGA GGAGATAGGC
  GTTACAGAGG GCCCAGCATG AGCAAAGTGT GTATATCCAA GGAGCCTGGG CTACCTCCCT
  GCCTCTCTCT CCCAAATTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321390091	CHEV_4_141376360	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222098751					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141547756 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	1368 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	446 bp distal
Gm56298	predicted gene, 56298	within coordinates
Tssr40108	transcription start site region 40108	1401 bp downstream
Tssr40109	transcription start site region 40109	1366 bp downstream
Tssr40110	transcription start site region 40110	1343 bp downstream
Tssr40111	transcription start site region 40111	880 bp upstream
Tssr40112	transcription start site region 40112	908 bp upstream
Tssr40113	transcription start site region 40113	937 bp upstream
Tssr40114	transcription start site region 40114	1259 bp upstream
Tssr40115	transcription start site region 40115	1293 bp upstream
Tssr40116	transcription start site region 40116	1333 bp upstream
Tssr44374	transcription start site region 44374	1313 bp upstream
Tssr44375	transcription start site region 44375	1080 bp upstream
Tssr44376	transcription start site region 44376	1062 bp upstream
Tssr44377	transcription start site region 44377	453 bp upstream
Tssr44378	transcription start site region 44378	332 bp upstream
Tssr44379	transcription start site region 44379	907 bp downstream
Tssr44380	transcription start site region 44380	919 bp downstream
Tssr44381	transcription start site region 44381	1275 bp downstream
Tssr44382	transcription start site region 44382	1294 bp downstream
Tssr44383	transcription start site region 44383	1345 bp downstream
Tssr44384	transcription start site region 44384	1812 bp downstream
Tssr44385	transcription start site region 44385	1818 bp downstream
Tssr44386	transcription start site region 44386	1828 bp downstream