rs222109735 SNP Detail

Summary

• ID
  rs222109735
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:146290240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGAAGAG TAGCTGCTGG
  ATCATCTCTC CAGCTACCTA CAAAGTCATT TCAAATGCAT TTGGTCAGTG CAAAAAGAAG
  CTAACATTCT GAGGATCATA GAAAGTTAGA ATTTTGACCC CAGAATTCCT ATCCAAGTAA
  TACATTCAAC TAAAAGTATG TATATATTTT TAAAAAGATG TGATATTGGT TTTTCTTTTT
  C
  TTTTTTCTTT TCTTTCTTTT TTTTTTTTTT TTTTTGCCTG CTGGTTGTTT CCAGGCAACC
  TTGAACTTGT CAAATAATAA AGTATAAACA AAGATTGTGA AATGCATGGC CTTACTTTGA
  AAGTCCTTCT CTTGACAGGC TAAATATACG ATTCCACTTT ATGACTAGAC AGTCGTTAAA
  GGTCACTTCC TTCCCTCATA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367072365	MGP_WTSI_5_147165006	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222109735					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367072365	MGP_WTSI_5_147165006	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:146290240 () rs orientation: forward

Symbol	Name	Function Class
Gm38747	predicted gene, 38747	103 bp upstream