rs222118791 SNP Detail

Summary

• ID
  rs222118791
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11685601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCGCCCAC CTTGCCGAAG
  TGCGCAGCCC AGTGCACGGG CGTCCAGCCG TAGAAGGAGT CCTCAGCGGC CAGGTGAGCG
  CGCGGCGTGT GTGGCAGCAG CGAACAGAGC GCGACCAGGT CCCCGTCCCG GCAGGCGCGG
  TGCAGCGGGA AGCGGAGCGA CAGCAGCTCC TCGCTGGAGA AGCCTGCCTC CACGGCCGCG
  S
  CCGCTCCCGC TGACATGATG GGTCGCTAGG AAGCACGCGA CTGATCGGCC AGAGGAATGT
  GCCGGTGAAG GCCTGCGAAG CTGCCGCCAC TCGAACACAA AGGACAGGCG AGCTGCTGCC
  GCGTCCCATC CGCATCCGAG CGCAGCGAGC ACTGAGGGCG GGACCTGAGC CACGGGGCGG
  AGCCTGCGCC TTGAGAGGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373700960	MGP_WTSI_8_11635601	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222118791					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373700960	MGP_WTSI_8_11635601	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11685601 () rs orientation: forward

Symbol	Name	Function Class
Ankrd10	ankyrin repeat domain 10	within coordinates
Cpgi20087	CpG island 20087	within coordinates
Gm45592	predicted gene 45592	1681 bp upstream
Gm64331	predicted gene, 64331	within coordinates
Mir7238	microRNA 7238	93 bp downstream
Rr400761	regulatory region 400761	117 bp upstream
Rr659600	regulatory region 659600	1331 bp distal
Rr659601	regulatory region 659601	221 bp distal
Rr659602	regulatory region 659602	520 bp distal
Rr659603	regulatory region 659603	143 bp proximal
Tssr80389	transcription start site region 80389	553 bp upstream
Tssr80390	transcription start site region 80390	522 bp upstream
Tssr80391	transcription start site region 80391	40 bp downstream
Tssr80392	transcription start site region 80392	92 bp downstream
Tssr80393	transcription start site region 80393	128 bp downstream
Tssr80394	transcription start site region 80394	144 bp downstream