rs222120374 SNP Detail

Summary

• ID
  rs222120374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9963548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGAAGTT TGTTGCTCAT
  ATCAAGCCCT TAGGTGGAGT GAACAAAAGG CCTCTATCAC AGGGTTCTTT CCTAGGTAGT
  TGGCATTAAC CCTCAGCTAG TGTAGGAACA CAAGTTTCCC CCACAGGTCA GTAGTAATGA
  ACTGGGGATT TGTTGGGTAG ACTCAGAACT GAAATGGCAG GCACAGGGAA TGCAGCTCTT
  Y
  GGGTGGACAG ACCTGTAGGG ATAGGACTCT GCATGCTCCT TCATTAGAGC CTGTATATTG
  GTTGACATCT GGTCCAAACG GCGCTGTTGA AGATGTTCTG TGGGGCTCTC TGGAATGTTC
  AAGTTAAACT CCACAGTTTT CTTTTTCATG TGACAGATTT CTTGGTAATC TGTGGAAGGC
  CCATCACCTA GGAACAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401720097	MGP_WTSI_19_10060674	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222120374					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401720097	MGP_WTSI_19_10060674	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9963548 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	within coordinates
Fth1	ferritin heavy polypeptide 1	1086 bp downstream
Rr543967	regulatory region 543967	1602 bp distal
Rr543968	regulatory region 543968	1113 bp proximal
Tssr155006	transcription start site region 155006	1965 bp downstream
Tssr155007	transcription start site region 155007	1892 bp downstream
Tssr155008	transcription start site region 155008	1601 bp downstream
Tssr155009	transcription start site region 155009	1255 bp downstream
Tssr155010	transcription start site region 155010	1067 bp downstream
Tssr158137	transcription start site region 158137	1947 bp upstream
Tssr158138	transcription start site region 158138	1858 bp upstream
Tssr158139	transcription start site region 158139	1565 bp upstream
Tssr158140	transcription start site region 158140	1344 bp upstream
Tssr158141	transcription start site region 158141	1316 bp upstream
Tssr158142	transcription start site region 158142	1291 bp upstream
Tssr158143	transcription start site region 158143	1225 bp upstream
Tssr158144	transcription start site region 158144	1087 bp upstream