rs222128472 SNP Detail

Summary

• ID
  rs222128472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129273397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCCCAGC AACCACATGG
  TGGCTCACAA CCATCCATAA TGAGATCTGA CGCCCTCTTC TAGTGTGTCT GAAGACAACT
  ACAGTGTACT TACATATAAT AAATAAATCT TTTTTTAAAA AAAGAAAGAA AATCATTAGG
  ACACCAGGTG TTGTGGCACA TGCATGTAAT GCCAGAACTC AGGAGGCTCT GAGTTCGAGA
  Y
  CACCCTGGTC TACATAGTTC CAGGACAGGC AGAGCTACAT AGGAGACCCT GTCTGGGGGA
  CACACACACA CACAGAGAGC AGGCAGGTCT CTCTGTGCTG TTCTCTTTCA GCCAGGATTA
  AGCTCAAAAC AACTAAGCCA ACCAGGAGGA TCCCTTTCCC GGTGGAGGCC CGGTGTGCAG
  GAGCCTTTTG CCTACACAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312507	CHEV_4_129056848	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222128472					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129273397 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14890	CpG island 14890	1525 bp distal
Gm12980	predicted gene 12980	240 bp upstream
Rr377177	regulatory region 377177	210 bp upstream
Rr600215	regulatory region 600215	1499 bp distal
Rr600217	regulatory region 600217	1232 bp distal
Tssr39145	transcription start site region 39145	1811 bp upstream
Tssr43497	transcription start site region 43497	1766 bp upstream
Tssr43498	transcription start site region 43498	1680 bp upstream
Tssr43499	transcription start site region 43499	1654 bp upstream
Tssr43500	transcription start site region 43500	598 bp upstream
Zbtb8a	zinc finger and BTB domain containing 8a	1576 bp upstream