rs222130647 SNP Detail

Summary

• ID
  rs222130647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69837857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTGCTCG GGCTAGGGTG
  ACCAGGTCCA TACCTTATTA CGTCCACTCC TTGGTGTCCG TTCCTCGCCT GTGAACCCCG
  GAGGACAGCA ATTGCTCGGT GCTGCAGCTT CGAAAAATGA ATGAGAGAGA GTGAGGCAAT
  AGAGGGAGGC AGGATGGCCT TCCCTCCCAT GTAGTGGGGT CTTGGCGGTG CAGAGCCTGC
  Y
  TTGATTGCCT TGACTCTTTC CCCAATCACC TTCTTATTGA ACCTGTTTCA GTACAGTGAC
  AGTGGCAGTT GATGGATGCA GGAAATCTTG AAATAAGGAT CGCACAGACA GCCTCTACAT
  TTTGTCAGCC CTTCCATCCC CTATGCTAGG CGCCGAGGTG CTTGTGTGCT GGCGGCAGGG
  CTACAGCAGA GAAAACGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386395827	MGP_WTSI_12_70892070	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222130647					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386395827	MGP_WTSI_12_70892070	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69837857 () rs orientation: forward

Symbol	Name	Function Class
4930512B01Rik	RIKEN cDNA 4930512B01 gene	within coordinates
Cdkl1	cyclin dependent kinase like 1	within coordinates
Cpgi4702	CpG island 4702	within coordinates
Rr257091	regulatory region 257091	744 bp proximal
Rr265514	regulatory region 265514	within coordinates
Tssr116527	transcription start site region 116527	810 bp upstream
Tssr116528	transcription start site region 116528	807 bp upstream
Tssr116529	transcription start site region 116529	785 bp upstream
Tssr116530	transcription start site region 116530	452 bp upstream
Tssr116531	transcription start site region 116531	348 bp upstream
Tssr116532	transcription start site region 116532	146 bp downstream
Tssr116533	transcription start site region 116533	211 bp downstream
Tssr116534	transcription start site region 116534	228 bp downstream
Tssr116535	transcription start site region 116535	242 bp downstream
Tssr116536	transcription start site region 116536	270 bp downstream