rs222135361 SNP Detail

Summary

• ID
  rs222135361
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113283720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTTCCAG GCTTACCCAA
  AGCTCCGCCC TTCGTTACTT GGGCCCCTCG GGCCCACTCT TCCGGCTGCG GTCGTCGCAT
  CAGGGCACCG CTTTCCCGCA GCTCCACCCC CTAAACACAA GCCCCTCCCG CGCCGGCCTA
  GTCTTCCCAC GTCGCCCCGC CCCTGACCAT ATCTGCGGGC CTCTGCGGCT CCCTTGCGTT
  M
  GTCCGGCTCT AGGCCCTGCC CTCAACTCCG CCCCACCCGG CGCTCCCGCC CCGTTCCTCC
  CAGTCGCCTT CCTCGGAGAC CAAGGCCAGG TCCCTACCGC AGCAGTCGCG CCAGCAGGAG
  GGAGGGAGCA GGCGGCGGCA GAGGGGGAGG GGAGAAGGGC GGGCTCCTCA CGCCCAGCCT
  CGCGCTGCCT GTCCGTAGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369709671	MGP_WTSI_6_113256753	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222135361					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369709671	MGP_WTSI_6_113256753	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113283720 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	378 bp upstream
Cpgi17838	CpG island 17838	within coordinates
Cpne9	copine family member IX	1188 bp downstream
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	85 bp upstream
Gm67816	predicted gene, 67816	within coordinates
Rr399829	regulatory region 399829	86 bp downstream
Rr636483	regulatory region 636483	1113 bp distal
Rr636484	regulatory region 636484	within coordinates
Rr636485	regulatory region 636485	681 bp proximal
Rr636486	regulatory region 636486	1136 bp proximal
Rr636487	regulatory region 636487	1566 bp proximal
Tssr58189	transcription start site region 58189	191 bp upstream
Tssr58190	transcription start site region 58190	401 bp upstream
Tssr58191	transcription start site region 58191	480 bp upstream
Tssr58192	transcription start site region 58192	1082 bp upstream
Tssr58193	transcription start site region 58193	1108 bp upstream
Tssr62434	transcription start site region 62434	1008 bp downstream