rs222144424 SNP Detail

Summary

• ID
  rs222144424
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131198435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAAGGGG TGGGTTTCAA
  TTCCCAGCAC TCATGGGGCA GCTTACAACT GTCTATCACT CTTGTCCCAA GGGATCCAAT
  GCCCTCTTCT GGCTTCTATG GGCCCTGCAT ACACAGGATG CACGAAAACA CCTATAGCAT
  AAAAATAAAA ATGTAAAAAG AAAGCAAATT ATTTATCTAA ATGCCCTTGT TTTAACAGTT
  W
  CTTTTCACTG AAAGAGGTTT CTTCTTTCTT TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC
  TTTCTTTCTT TCTTTCTAAC CTACTAAAGT TTACTAAATC CATGGTTCAT CATCTTTTAA
  AATGCTGTTT GTTTGGGCTG AACAGATGGC TCAGCGGTTA AGAGCACTGG CTGCTTTTAC
  AGAAGACCCA GGTTCAATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359739346	MGP_WTSI_3_131155638	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222144424					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359739346	MGP_WTSI_3_131155638	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131198435 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13839	CpG island 13839	1736 bp distal
Gm36753	predicted gene, 36753	within coordinates
Rr585352	regulatory region 585352	1391 bp distal
Rr585353	regulatory region 585353	1988 bp distal
Rr585354	regulatory region 585354	104 bp distal
Sgms2	sphingomyelin synthase 2	1263 bp upstream
Tssr31737	transcription start site region 31737	1106 bp downstream
Tssr35717	transcription start site region 35717	1932 bp upstream
Tssr35718	transcription start site region 35718	1906 bp upstream
Tssr35719	transcription start site region 35719	1663 bp upstream
Tssr35720	transcription start site region 35720	1617 bp upstream
Tssr35721	transcription start site region 35721	1386 bp upstream
Tssr35722	transcription start site region 35722	1338 bp upstream
Tssr35723	transcription start site region 35723	1276 bp upstream
Tssr35724	transcription start site region 35724	1265 bp upstream
Tssr35725	transcription start site region 35725	1226 bp upstream