rs222145911 SNP Detail

Summary

• ID
  rs222145911
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104441358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTGCGTG GGAGCAGCCA
  CCCGGAACTT AGGAAAGCGT GTACCTCCGT GCCCTCCAGC CCACCCACGC ATGGCCTAGG
  ACACTTGATT TGCTTACGTT GCAAATTGGG GGTGGTGGTA AGGATTGGAT AGAGACCGGC
  TTCAGTTGGG GAGGTGACAG TTTCTTGTTT TTGTTTTAAG AGAAACAAAG TCTTCTCGGG
  R
  ACGCTTCAGA AAGGCCAAGC CCACCTAGAG AAGTGACCTT TTTCCATTAC AATGACTTTA
  CTGTCACCAG GTTCCAGGAC ACACCTGCTG CCCTCCAACA TTTTCCCACG TTCGGTTCTA
  AAGGGAGATA AATTGATTGA CAAGAACTGG AGGCTGCAGT GACTTCGCTG TGTTCGTTTG
  TGTTGGTGGT TGTGAGTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387185443	MGP_WTSI_12_105713309	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222145911					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387185443	MGP_WTSI_12_105713309	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104441358 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5026	CpG island 5026	1365 bp distal
Cpgi5027	CpG island 5027	144 bp distal
Cpgi5028	CpG island 5028	857 bp proximal
Gsc	goosecoid homeobox	1863 bp upstream
Gscdt	goosecoid homeobox divergent transcript	within coordinates
Rr2050	regulatory region 2050	within coordinates
Rr387727	regulatory region 387727	within coordinates
Rr471922	regulatory region 471922	1755 bp distal
Rr471923	regulatory region 471923	within coordinates
Rr471924	regulatory region 471924	1788 bp proximal
Tssr117576	transcription start site region 117576	1845 bp upstream
Tssr117577	transcription start site region 117577	1726 bp upstream