rs222145963 SNP Detail

Summary

• ID
  rs222145963
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134129023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCAACT CGGGCCACCG
  CGGATGATCC GCCGTGGAGG AGCCCTGGGC GGACGATGGA ACTGCACATT CTGGAACACC
  GGCTGCAAGT TGCCAGCGTC GCCAAGGAGA GTATCCCGCT CTTCACCTAC GGCCTCATCA
  AACTTGCCTT CCTGTCTTCC AAGACCAGGT GAGAGAAAGA GAGTAAGGGG CGAGGGGATG
  G
  CTGACGGGGG GGGGGGGTGT CGGGGGGGGC TCATGGTACC AGCCCCGGGA CAGACAAAGA
  GGCGCACCCC GGGGGGACGC AGTGCAAAAC AACTTCATCC CCCCCTAATC TCTGCCATTC
  TCCTGCATCG GACAAAGCCA CCCCTGTGCT CTCTAGTGGG GGTCCCCTCC ACCCAGAAGC
  CCCCACCCCA CTGCGCCTCC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366802135	MGP_WTSI_5_134576054	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222145963					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366802135	MGP_WTSI_5_134576054	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134129023 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Castor2	cytosolic arginine sensor for mTORC1 subunit 2			Intron
				Noncoding-Transcript-Variant
Cpgi16713	CpG island 16713			48 bp distal
Gm15627	predicted gene 15627			543 bp upstream
Rr621932	regulatory region 621932			998 bp distal
Rr621933	regulatory region 621933			463 bp distal
Rr621934	regulatory region 621934			1013 bp proximal
Tssr49079	transcription start site region 49079			489 bp downstream
Tssr49080	transcription start site region 49080			424 bp downstream
Tssr49081	transcription start site region 49081			387 bp downstream