rs222147135 SNP Detail

Summary

• ID
  rs222147135
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:182782599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGTGAGGT CAGTCCTGGA
  GCCTGTGTTG TGGGAATCCC GCTTGGGAGG TGAGAGCCTT GTAGTTGCAA GGGGTCCAGC
  AGGGGGTTCC CTGAGACCGG AAGGGGCCCG GGACGTTGCT GGACACGTTA GTGCCCCCGC
  CCCTCTCTCT TCCTCCTGGC TTCGTCCTGA ACCCTTTCAA CTCTCTTTCC TGCCTGTGCT
  Y
  TCTGCCACTC AGTGCCACGG AAACTGGGGT CCCTCGGCCC AGCGAGCTGA GAGTAAGCAG
  AGTGCCCAGC GGGACAATTC TAGGATTGAC AAGTCACTTG CATGCTGGCT TTGGGACAAG
  GTTCCCTAGT TCTCTCTTCT GGCTTTCACC TTTGGCCCCA CCCTCTGGAA GAGACAGGTA
  TTTAACGCGC GCGGAGTCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352644658	MGP_WTSI_1_184885165	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222147135					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352644658	MGP_WTSI_1_184885165	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:182782599 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1152	CpG island 1152	within coordinates
Gm69962	predicted gene, 69962	1284 bp upstream
Rr425013	regulatory region 425013	1295 bp distal
Rr425014	regulatory region 425014	1049 bp distal
Rr425015	regulatory region 425015	236 bp distal
Rr425016	regulatory region 425016	within coordinates
Rr425017	regulatory region 425017	1163 bp proximal
Rr425018	regulatory region 425018	1976 bp proximal
Tlr5	toll-like receptor 5	within coordinates
Tssr10570	transcription start site region 10570	206 bp downstream