rs222151380 SNP Detail

Summary

• ID
  rs222151380
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:66955722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACCTCAT CTCATGATAG
  TTCAAGAGGC TGACAGCTGT GCTTTGAGAG GACAGCATTC CACAGTCTTA CCTTTTAAGT
  TTCAAAAGTT CTCAGTATAC GAGAATATGT CAAATTCTGA ATATATTACC ATCATGTCTA
  TTTCCACAGA AGTCAGCAAG ATCACACGAT TTAGTAGTAC TGAGAAAGAA AACTTGAGGT
  K
  AAGAAGTAGG CATCAGTTTT GGAGGATGGT AGACCACCAC TTTATTATTC TGAAAACATA
  GATAACAAGA AAGAATAAAG ACTTTATCCC TGCTTTTTCC CGTAAAACCT GATTTCAAGG
  TAAGCAAGTT GCAAGCGAAG CCTTCAGTTT CGGTGTTTTT GTTCCTGTTG CCTTCATTCT
  CAGCGATCAG CTTCCTGGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323345146	CHEV_10_66582691	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222151380					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:66955722 () rs orientation: forward

Symbol	Name	Function Class
Gm65987	predicted gene, 65987	within coordinates
Gm67716	predicted gene, 67716	554 bp upstream
Jmjd1c	jumonji domain containing 1C	within coordinates
Rr215833	regulatory region 215833	1922 bp distal
Tssr93804	transcription start site region 93804	430 bp downstream