rs222163259 SNP Detail

Summary

• ID
  rs222163259
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:65757155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACAACATG TTTATAAACC
  TTGCCCCTGA CACGTTCCCG GCCTCTCCTC GCTGTTTTGA TTTTGCCCTG TTAGCAGATA
  CTTAGAAAAG CAGAGGTTCA GAGGGTAGTG TGTGAATGTA GCTCTGGGCT CACAACATGA
  CCTACAAGAA GTTACCATAG GTCAAGTGGT CAAAACAAAA CAAAACAACA ACAAAAAACA
  W
  CTCACATATT AAATGTAGAC AAACAAAACA CAGGAGTTAA TACTTCATTC CATTTAGTGA
  TGAGTTGGAT AGATATTGCC ACATGACGAA ATGTCAAAAT CAGCAGTCTT GCAAAGCCAA
  GTATCACCAT CATCAAATGA CTCCCATGTC CCATTGACAT ATGCTTCTGT TTAGGTCTTA
  CAGCATGAAA AACCCCTAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368613870	MGP_WTSI_6_65730165	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222163259					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368613870	MGP_WTSI_6_65730165	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:65757155 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17503	CpG island 17503	700 bp distal
Gm16838	predicted gene, 16838	922 bp upstream
Prdm5	PR domain containing 5	within coordinates
Rr631490	regulatory region 631490	1060 bp distal
Rr631491	regulatory region 631491	432 bp distal
Tssr56854	transcription start site region 56854	1109 bp downstream
Tssr61222	transcription start site region 61222	529 bp upstream
Tssr61223	transcription start site region 61223	477 bp upstream
Tssr61224	transcription start site region 61224	465 bp upstream
Tssr61225	transcription start site region 61225	448 bp upstream
Tssr61226	transcription start site region 61226	393 bp upstream