rs222163921 SNP Detail

Summary

• ID
  rs222163921
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72156172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCACAGA CGTGTGAACG
  TGTCCTCCAT CCGCTGCCTC AAAGACAGGA AACATCTGCT GTAATTTTTG CCGGCTCATC
  TCGAGGGATA AAAGTATCTG AGCGAAAATT TTCCACATAA GGTGGAGGGG CACTAGGGCC
  TGAAGACCGA ACAACGACCT GACCCTTGCT TCCATTCCTT TTGGACTTGC TCTCTGATTC
  R
  TCTTTCATCA GGATGATATC TCTCTTCCTC ATAACGAGCT GCTTCCTCCT CCAAATCTTC
  CTCATCAGTG GGACTAAGCT CCTCACTTGA ATCCGAACCA TCAAGTCCCA GAGCCTCAAG
  TTCCTTTACC GGATAAAGGC TCTTCTTTTT GGGGGCCTCT TTTCCCCGCT CCTCTCTCTT
  CTCTCCCGGG GCGTCCTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	NZW/LacJ	PL/J	RF/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss378014704	MGP_WTSI_9_72096697	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	NZW/LacJ	PL/J	RF/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs222163921					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378014704	MGP_WTSI_9_72096697	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72156172 () rs orientation: forward

Symbol	Name	Function Class
Rr383575	regulatory region 383575	1717 bp upstream