rs222170989 SNP Detail

Summary

• ID
  rs222170989
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3121632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTTTTCAA GACAGGGCCT CTCAGTAAAC TTGGAGCTGA
  CCAATTAAAC TAGATTAGCT AAGCCAGGAG CCACAGGAAT CCTCCTGCCT CCACTTCCCC
  G
  TGCTGGGAGT GGAAGCGTGC CTGGCTTTTC ACGTGGTTCT AAGGAACTGA ACTCAGGTGC
  TCATGCTTGC CTTGCAAACA CCCATTTTCC CAACTGTGG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323546737	CHEV_11_3071635	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222170989					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3121632 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	674 bp proximal
Cpgi2458	CpG island 2458	1632 bp proximal
Rr441480	regulatory region 441480	1420 bp distal
Rr441481	regulatory region 441481	within coordinates
Rr441482	regulatory region 441482	350 bp distal
Rr441483	regulatory region 441483	563 bp proximal
Rr441484	regulatory region 441484	1039 bp proximal
Rr441485	regulatory region 441485	1559 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	1163 bp downstream
Tssr106449	transcription start site region 106449	1687 bp downstream