rs222174691 SNP Detail

Summary

• ID
  rs222174691
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:7832703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACCTCAG TTATCACCCT
  CCGGACAGAG ATAAAGTTTA TCTCCAGGCT GGGGGATGTG AGAAGTCCTT ATCAGCTGCC
  TCAGTAGAGA AAGTGCTGCT CTAACCAGGA GGCACAGCAG CTGCACCTGC TCTCCCGGGC
  CCAGCCCCTC ACCCCAGGTA ACTGCCCTAC CCAGCCCTCA GCAAGGCTAC GTGGGGCCAT
  W
  GGAGCAGAGG CAGGACCTGG GGAGCAGATG TGGTAGTTAG GAGGTTAGAG GTAGAGTTTG
  AGAGTCAGAA GTCTGGGTAT ATGGCTGTGG AGTTTAAGGG AAGGAAAAAA TTGGCTCGAC
  TTCTCTGACC CAAGTTCAGA GATCTGTTTG GGGTTTGGAA GTAGGTTAGG AAAACAGATG
  AATTTAGGAA ACCAGAGGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325888455	CHEV_X_7543590	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222174691					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7832703 () rs orientation: forward

Symbol	Name	Function Class
Gata1	GATA binding protein 1	Intron
Gm14820	predicted gene 14820	within coordinates
Gm39488	predicted gene, 39488	within coordinates
Gm52419	predicted gene, 52419	within coordinates
Rr689701	regulatory region 689701	1902 bp distal
Rr689702	regulatory region 689702	105 bp distal
Rr689703	regulatory region 689703	within coordinates
Rr689704	regulatory region 689704	983 bp proximal
Rr689705	regulatory region 689705	1436 bp proximal
Rr689706	regulatory region 689706	1517 bp proximal
Tssr160483	transcription start site region 160483	98 bp downstream
Tssr162833	transcription start site region 162833	1338 bp downstream
Tssr162834	transcription start site region 162834	1353 bp downstream