rs222185879 SNP Detail

Summary

• ID
  rs222185879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141174342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTTCTTG ATAAAGGCCA
  TTTTAATCCC CCCAAGAATT GAGAAATTAT TGTTCGTAAT AAATTCCAAA AGGTATCTCA
  GGACTTCAAG ACAAAACTGT AATTGCGAAT AATAAGCCAC AACAAACTAC CAAGAATAAG
  TTGCCAGAAG AAATTCTATT CTTCCAGTTC CATGACCGGC TGCTTTTTTG CTTCCTGTTA
  Y
  GGCTGTTTTA CTAGCTACTT TTCATTTCTC TTACAGAATG ACTGTGTCTG CTACACACAC
  GTACAATAGC TTGCCTCACA TTGCTGGCTT CAGTAGTGCT TTAGGCTTTG TGTGTCATAA
  TCATCTGGGA TGTTTGTTCC AATGGGAATA CCTGGAGAAA TAATCCTCAG ATGTTTTGAT
  GTGGGTTTTG ATTTGGTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404774743	MGP_WTSI_X_138825889	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222185879					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404774743	MGP_WTSI_X_138825889	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141174342 () rs orientation: forward

Symbol	Name	Function Class
Acsl4	acyl-CoA synthetase long-chain family member 4	811 bp upstream
Cpgi22977	CpG island 22977	456 bp distal
Gm61820	predicted gene, 61820	40 bp downstream
Rr8330	regulatory region 8330	within coordinates
Tssr162237	transcription start site region 162237	615 bp downstream
Tssr164293	transcription start site region 164293	1001 bp upstream
Tssr164294	transcription start site region 164294	983 bp upstream
Tssr164295	transcription start site region 164295	918 bp upstream
Tssr164296	transcription start site region 164296	900 bp upstream
Tssr164297	transcription start site region 164297	826 bp upstream
Tssr164298	transcription start site region 164298	765 bp upstream
Tssr164299	transcription start site region 164299	732 bp upstream