rs222187590 SNP Detail

Summary

• ID
  rs222187590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116693253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGG GGTGGGATGC CACTGAGTAT
  Y
  GGCACCAGAC CCAAGGCTCT TCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321918809	CHEV_6_116666310	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222187590					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116693253 () rs orientation: forward

Symbol	Name	Function Class
Rr142500	regulatory region 142500	1583 bp proximal
Rr145611	regulatory region 145611	within coordinates
Rr147145	regulatory region 147145	1054 bp distal
Tmem72	transmembrane protein 72	within coordinates
Tssr62610	transcription start site region 62610	334 bp downstream
Tssr62611	transcription start site region 62611	427 bp downstream
Tssr62612	transcription start site region 62612	445 bp downstream
Tssr62613	transcription start site region 62613	596 bp downstream