rs222188077 SNP Detail

Summary

• ID
  rs222188077
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151958392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTCAGTT TAAGGAATGT
  AGAAATAATT AGTAAGATTA TACAGAATAA AATATCACTC CTAAGATAGG CCCATTCTGC
  CCATACTACT GGGCAACGGA CGTGAATATT TTCCTTTCAG ATAATATTTT TAGGCTAGCC
  ACTATTAATA AGTTTATACT GTACTAAGTA TTTTAATTCA GCAACATCCT GATTAGTTCT
  Y
  GTTTGTTCTG TTAGTTACAG AAATAACCCC CAGTGTAGCA TTTAGCACCT ACCTGCTCCG
  CTCTTTTTGC TAATTCGCGC TGTATTTTCC TCTTTTCTAA CAGATCCTGC TCAATTCTGC
  GTTTTCTTTC TTCTTCTGTT CTCTTTCTTT GTTCTTCCTG TCTGTGTTTC TCCATTTCAT
  CGAATTTACC TTTAACTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360262502	MGP_WTSI_3_151915719	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222188077					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360262502	MGP_WTSI_3_151915719	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151958392 () rs orientation: forward

Symbol	Name	Function Class
Gm43185	predicted gene 43185	within coordinates
Nexn	nexilin	Intron
Tssr1100	transcription start site region 1100	115 bp upstream
Tssr32404	transcription start site region 32404	853 bp upstream
Tssr36193	transcription start site region 36193	73 bp downstream
Tssr36194	transcription start site region 36194	163 bp downstream
Tssr36195	transcription start site region 36195	315 bp downstream
Tssr36196	transcription start site region 36196	329 bp downstream
Tssr36197	transcription start site region 36197	366 bp downstream
Tssr36198	transcription start site region 36198	925 bp downstream
Tssr36199	transcription start site region 36199	940 bp downstream
Tssr36200	transcription start site region 36200	964 bp downstream
Tssr36201	transcription start site region 36201	1000 bp downstream
Tssr36202	transcription start site region 36202	1046 bp downstream