rs222190946 SNP Detail

Summary

• ID
  rs222190946
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:116150080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACCTGGA GCCAATATAC
  TTTTCTGAAC CTCACTGAGG GTAACAGTTA CAAAGTTGCC ATCACAGCTG TTTCGGGAGA
  AAAGCGCTCC TTTCCGGTGT ATATCAATGG CTCTACAGGT AAGAATGGTG TTGTCTGTGG
  TTAATAGTCA GCTGTATGTT TTTGGTTTTT CTTCTTTTTG ATGGTATTGG GGATGAAACC
  M
  CAGAGACTCC TGCATGCTAG GCAAACACTC CCCAGCCCTC TCTGGCACCT TCAAAATTAT
  ATGCTATCCA AGAAATGGAA AAAATGCCAC CCATCATAAA CGAATAAAGC AAATAATATG
  TTGAGAGGAG ATTTAATAGA GAGAGAAGAC TGGACCGGCA TAGGGTGTGT GAATGTGCCG
  CTACATTGCT AGGTGATTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323487241	CHEV_10_115751231	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222190946					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116150080 () rs orientation: forward

Symbol	Name	Function Class
Ptprb	protein tyrosine phosphatase receptor type B	Intron
Tssr95861	transcription start site region 95861	880 bp upstream