rs222191777 SNP Detail

Summary

• ID
  rs222191777
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79991604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGAGAGA AAAAGTTGAG
  CCATTGTCAA AAAGGAAGAA AGAAAGAAAG AAAGGAAAGA AGAAAGAAAG AAATGAAATG
  AGCGTGTGAA GCCAACTGTG TTTCTATCTA CCCATTCCTC AATTTCTAGG CTGCACGGAC
  ACCTTGGGGG ATATGGATTA TTCCATTTTA GACCCCAGAG ACCTCTGTTC AGCCTGTGGG
  R
  CATCCCTCTG TAACTGCAGC GCCATGGCAA CCACCAAGCC TGTCAGAGAG TCCAGTCATT
  AGGCTTTCCC CTGAGCCTTA TCTCCCCAGC TGCCAGCCCA GACACAAAAG CTACCTGCCT
  GGTGGAATAC ACTTAGCAGC TGGCTGTCTC CACTTCTCAG AACCCTTTGG GGAGATGCCA
  AGGTCTTGCT TATCCCTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372043640	MGP_WTSI_7_87486742	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222191777					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372043640	MGP_WTSI_7_87486742	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79991604 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19331	CpG island 19331	1358 bp distal
Cpgi19332	CpG island 19332	1027 bp proximal
Hddc3	HD domain containing 3	1248 bp upstream
Rr400403	regulatory region 400403	1455 bp downstream
Rr400404	regulatory region 400404	1087 bp upstream
Rr649870	regulatory region 649870	1147 bp distal
Rr649871	regulatory region 649871	1488 bp distal
Rr649872	regulatory region 649872	819 bp distal
Rr649873	regulatory region 649873	767 bp proximal
Rr649874	regulatory region 649874	1211 bp proximal
Tssr67435	transcription start site region 67435	1235 bp upstream
Tssr67436	transcription start site region 67436	1309 bp upstream
Tssr73215	transcription start site region 73215	1846 bp upstream
Tssr73216	transcription start site region 73216	1706 bp upstream
Tssr73217	transcription start site region 73217	1646 bp upstream
Tssr73218	transcription start site region 73218	1625 bp upstream
Unc45a	unc-45 myosin chaperone A	856 bp upstream