rs222193728 SNP Detail

Summary

• ID
  rs222193728
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4840669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAT GGCAAGGGAG GTTGGGGGCG
  R
  GGACAATGAC ACAAATGTAC AAATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319612285	CHEV_1_4760527	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222193728					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4840669 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	685 bp upstream
Rr407421	regulatory region 407421	1776 bp distal
Rr407422	regulatory region 407422	1883 bp distal
Rr407423	regulatory region 407423	116 bp distal
Rr407424	regulatory region 407424	370 bp distal
Tssr5799	transcription start site region 5799	648 bp upstream