rs222194261 SNP Detail

Summary

• ID
  rs222194261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5822373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTATGTCC AAAGTGGACA
  TGGGTGCTGG CCAGAGTCCT GCAGGAGCTT GAAGCTGGGA ATGATGTTTG AGTCACTGAG
  CTGAGCTGGC AGTTGGAACA TGGCAAAGCC AGGAATAAAC CTTTTCTTCC AGAATGTCTC
  TCAGCACCCT CTGTTGGCCC ACAACCTCCT ATAACTCCAG TTTTAGGAGC GCCAATACCC
  Y
  GTGATAGTTT GTATATGGTT GGCCCAGTGT ACTCCTATTA AGAAAATACC TCTGTGATGG
  TTTGTATATC CTTGGACCAG GGAGTGGCAC AATCTGGAGG TGTGACCTAA TGGGTGTGTC
  ATTGTAGGTG TGGGTATAAG ATCCTCACCC TAGTTGCTTG GAAGTCAGTC TTCCACTAGC
  AGCCTTTGGA TGAAGACATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401662078	MGP_WTSI_19_5772345	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222194261					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401662078	MGP_WTSI_19_5772345	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5822373 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10479	CpG island 10479	773 bp distal
Gm59602	predicted gene, 59602	within coordinates
Gm59603	predicted gene, 59603	within coordinates
Rr363624	regulatory region 363624	372 bp distal
Rr405811	regulatory region 405811	779 bp downstream
Scyl1	SCY1-like 1 (S. cerevisiae)	912 bp upstream
Tssr157640	transcription start site region 157640	1044 bp upstream
Tssr157641	transcription start site region 157641	974 bp upstream
Tssr157642	transcription start site region 157642	937 bp upstream
Tssr157643	transcription start site region 157643	922 bp upstream
Tssr157644	transcription start site region 157644	705 bp upstream