rs222198535 SNP Detail

Summary

• ID
  rs222198535
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71149329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTTCCAT GCCACTACAA
  AATGCTCTCC TTGCCTGATA GGGAAAGTGA GTCTCAACAG AGGTAAAACT TAATTTGGTA
  CGTAAACCTG TCCCCAGTCA GCTCAAACCA CCGCCTCCAG AGCGCACGCC CGCCCATCCC
  CCACCCGCCA AGGCCAAGTC CCAAGGTCAG GGCGGAGCCT CGCGCGCTCC GCCAAGCTCC
  R
  TACGGCCCCG GGGAGAGGCA GGCCTGGCGC CGGGGGCTGG CTGGCGTTGG GCCAGCACTA
  GCTGGCTCAG TCGTTTGGCG GGGGGCGGGG GAGGGGGTGC TGGCTGGGAT ATGGCTCGCG
  AAGCGCAAAC CCCACGTGTG TGGTGAGGGG AGAGTCCACT CTATCTTTCT GGATGGTCAC
  TTGCCTACAA AAGGGGATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375104798	MGP_WTSI_8_73220578	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222198535					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375104798	MGP_WTSI_8_73220578	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71149329 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20485	CpG island 20485	999 bp distal
Cpgi20486	CpG island 20486	within coordinates
Gm64347	predicted gene, 64347	within coordinates
Gm64349	predicted gene, 64349	1814 bp upstream
Rr368548	regulatory region 368548	950 bp downstream
Rr368549	regulatory region 368549	1617 bp upstream
Rr368550	regulatory region 368550	1980 bp upstream
Rr400910	regulatory region 400910	1099 bp downstream
Rr664888	regulatory region 664888	within coordinates
Rr664889	regulatory region 664889	1324 bp proximal
Rr664890	regulatory region 664890	1825 bp proximal
Rr664891	regulatory region 664891	1979 bp proximal
Tssr77799	transcription start site region 77799	1847 bp upstream
Tssr81647	transcription start site region 81647	1638 bp downstream
Tssr81648	transcription start site region 81648	1655 bp downstream