rs222199406 SNP Detail

Summary

• ID
  rs222199406
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:5856411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTCCCT CCCTCCCTCC
  CTCCCTCCCT CCCTCCCTTC TTTCTTTCTT TCTTTTTTTC CTTCCTTCCC TTTCCTTCCT
  CCTCCCTCCT TTCCCCTCCT CTCTCTTTCT GTTCCTTTTC TGGTACTGGG TACTGAACCA
  AAGGCCTTGT GCTTCATTGC AAATGCTTTA CCACTGAGCT AATTCCTCAG CATAGTCACA
  W
  GCTTTCAGAG AAGGAAGGCA AGGCGTGTGT AGCTCAAGAA TAAGAGCAGA CGTACACTTG
  GCCCTGTGAT GGGCTGGTCA GATTTTCTTT CTTTTTATTA AACTAGTAAC CCGAACCATT
  TGTACAGACA AAATGTCCTT GGGATTCTTT CGCATGTTCT TGAAAGTGGT GCCAAGAGGG
  AAGAAAGTGT TTTTATGATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323878275	CHEV_12_5813217	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222199406					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:5856411 () rs orientation: forward

Symbol	Name	Function Class
Gm32442	predicted gene, 32442	within coordinates
Tssr112600	transcription start site region 112600	1782 bp upstream
Tssr112601	transcription start site region 112601	1853 bp upstream