rs222199640 SNP Detail

Summary

• ID
  rs222199640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70703535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGAGTGG GGCAGGGAGC
  AAAATGAAAA ACTCTTGAGC ATGGAAGGCT CTGAGGGAAT CTCAGTTTTT TAGCTTCCAA
  GTTGAGTACA GAGGAGTCCA ATGTTCCAAA AACCCATCTG GGACAAATCT TTTAGGATAC
  GGATGAGAAT CAGGTATGAG GAAGCCAAAG GACAGGGCTT GGAGGGTCCC ACACACATGG
  Y
  CCAACCAGAG TAGCCTCAGT CTTATTTGCC CACACGTATA TGGTTTCCTT GGGAGGAGAG
  AAAGGGAGCA GGGGAGAGAG ACAGACAGAC AGAAAGACAG ACAGAGCAGG TCTAATACTT
  CAGCCTTCTG ATGTTGAGCT CAAGGCACCA AAGGCCAGCA AGTCACTTGT CTCAGGACGG
  CCAGGACCAT GCCAGCATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391466481	MGP_WTSI_14_70865902	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222199640					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391466481	MGP_WTSI_14_70865902	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70703535 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6694	CpG island 6694	771 bp proximal
Phyhip	phytanoyl-CoA hydroxylase interacting protein	within coordinates
Rr290302	regulatory region 290302	1066 bp proximal
Tssr4470	transcription start site region 4470	515 bp upstream
Tssr126423	transcription start site region 126423	360 bp upstream
Tssr126424	transcription start site region 126424	444 bp upstream
Tssr126425	transcription start site region 126425	471 bp upstream
Tssr126426	transcription start site region 126426	628 bp upstream
Tssr126427	transcription start site region 126427	725 bp upstream
Tssr126428	transcription start site region 126428	758 bp upstream
Tssr126429	transcription start site region 126429	1517 bp upstream
Tssr126430	transcription start site region 126430	1586 bp upstream
Tssr126431	transcription start site region 126431	1740 bp upstream
Tssr126432	transcription start site region 126432	1774 bp upstream