rs222200488 SNP Detail

Summary

• ID
  rs222200488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108885706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGCAGTAC CCACCACCCT
  ACCTGGCCCA GCCCACAGGG CCGCCACCCT ACCATGAGTC CTTGGCTGGT AAGTATCACT
  GTGGATTCAG TAAACCTGCA TGGTCCCCCA ACTCATGCCT CTGCTCCTCG GGTCCTTTCC
  TCCTGGCTTG CCTGCCCACT TGCGTTGCAG CCCAGTGTCC CCACAGCTAA CCCATGTCCT
  Y
  TCTCCTTCCA GGAGCCAGCC AGCCTCCATA CAACCCGACC TACATGGATT CCCTAAAGAC
  AATTCCCTGA ACCTGCCCCC AGCCTCTTTG GCTGCCATTT ATGTCGTGTG TGAGTGAGTG
  ATACGCAGAG TTCTTTACTG CTGTCTGTGG TGTGTGTGCC TTGTCTAGAC ATGTGGCTTC
  CTCTGCTGTT GACCAGGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378877891	MGP_WTSI_9_108959152	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222200488					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378877891	MGP_WTSI_9_108959152	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108885706 () rs orientation: forward

Symbol	Name	Function Class
Gm53191	predicted gene, 53191	1295 bp downstream
Rr368866	regulatory region 368866	1559 bp downstream
Rr686954	regulatory region 686954	1765 bp distal
Rr686955	regulatory region 686955	1016 bp distal
Rr686956	regulatory region 686956	948 bp proximal
Shisa5	shisa family member 5	within coordinates
Trex1	three prime repair exonuclease 1	1294 bp downstream
Tssr87207	transcription start site region 87207	1767 bp downstream
Tssr87208	transcription start site region 87208	1737 bp downstream
Tssr87209	transcription start site region 87209	1648 bp downstream
Tssr87210	transcription start site region 87210	1598 bp downstream
Tssr87211	transcription start site region 87211	1524 bp downstream
Tssr87212	transcription start site region 87212	1005 bp downstream
Tssr87213	transcription start site region 87213	647 bp downstream
Tssr87214	transcription start site region 87214	575 bp downstream
Tssr87215	transcription start site region 87215	344 bp downstream
Tssr87216	transcription start site region 87216	291 bp downstream
Tssr87217	transcription start site region 87217	218 bp downstream
Tssr87218	transcription start site region 87218	within coordinates
Tssr87219	transcription start site region 87219	300 bp upstream
Tssr87220	transcription start site region 87220	386 bp upstream
Tssr87221	transcription start site region 87221	610 bp upstream
Tssr87222	transcription start site region 87222	657 bp upstream
Tssr91570	transcription start site region 91570	1842 bp upstream
Tssr91571	transcription start site region 91571	1077 bp downstream
Tssr91572	transcription start site region 91572	1598 bp downstream
Tssr91573	transcription start site region 91573	1755 bp downstream
Tssr91574	transcription start site region 91574	1985 bp downstream