rs222201093 SNP Detail

Summary

• ID
  rs222201093
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171973838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTACACAA GTTGTTCTTT
  TTTTTTTCCG GGGCAGGGGG GAATAAATTC CTTTATACTA AAGACCCTAA AAAGCTCTAT
  GTTTCCTGAA GAAAACCACC CTACAACTCT AGTCCTTACT GTGTACTGTT TGCAATCCTC
  GATAATGCAA GGTATTGCAG GTGTGCCAGG ACCATCTTGT GACCCAGAAG TCACTGAAAG
  W
  CTGTAAAGCT CCTTCAGAAG AACAACCCCA TAGATGAGAG AAAGCACCTC GGTTTTCTAT
  AAGGATCTTT TTCAAGGTCA AATTACTTCC AAAAAAGCCG GGAAGTGGTG GCGCACGCCT
  TTAGTCTTGG CACTTGGGAA GCAGAGGCAG GCAGATTTTT GAGTTCAAGG CCAGTCTGGT
  CTACAAAGTG AGTTCCAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352399881	MGP_WTSI_1_174076402	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222201093					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352399881	MGP_WTSI_1_174076402	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171973838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1037	CpG island 1037	1566 bp proximal
Dcaf8	DDB1 and CUL4 associated factor 8	1736 bp upstream
Gm10171	predicted gene 10171	1370 bp upstream
Gm70088	predicted gene, 70088	1458 bp downstream
Rr372457	regulatory region 372457	1021 bp upstream
Rr423469	regulatory region 423469	900 bp proximal
Rr423470	regulatory region 423470	1706 bp proximal
Rr423471	regulatory region 423471	1918 bp proximal
Tssr10170	transcription start site region 10170	1766 bp upstream
Tssr10171	transcription start site region 10171	1787 bp upstream
Tssr10172	transcription start site region 10172	1827 bp upstream
Tssr10173	transcription start site region 10173	1839 bp upstream
Tssr15148	transcription start site region 15148	1652 bp downstream