rs222202058 SNP Detail

Summary

• ID
  rs222202058
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127932139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTTGACT TATAATTTAT
  GGTTGTAGAG GAATACACTT TCAACACTTA CACATGTGGT AGGGTAGTCC AAGTATATTC
  CATTTCCATG CATACTGTTG ATTCCTCCAG TGGTCCAACA TTACTGAAAA CAGAGGACAG
  GTGCTTTAGT CTAACCCATG AAGATGTTCT ATACATGCAC CTCCAAGAAG ACAGAAGACA
  W
  GAGCAGCGAG AACATACAGC TGCAGCAAAT TCAGATACCC CTGGAAGAAA CAGAAGCAGC
  AGAACTCAAG ATCGTAGAAG CCAAAGCTTT TGTCCAGGTC AGAATAAGCA ACAAGTACCA
  GAAGGTAAGA GGACCAACAG AGAAGCCCTG CTTCCAATAC CTCTTCCTCC CCAGCACCTT
  AAGAGCACAT ACAGGAAGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320501503	CHEV_2_127915955	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222202058					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127932139 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	Intron
Gm23101	predicted gene, 23101	159 bp downstream
Rr564642	regulatory region 564642	1771 bp distal
Rr564643	regulatory region 564643	1112 bp proximal