rs222205323 SNP Detail

Summary

• ID
  rs222205323
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130548906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTGAGCTT CAAGAAGAGA CCACGCAGCC
  GGACACGGCC AATGAGGTGG TGGCTGTGGA AGGAGCCGCG GCCAAGCCGT CACCTCCACT
  GGGGACACTG CCCAAGGGTG CCCGCCCAGG CCCTGGCCTC CACGACAATG CCATCGATTC
  K
  GGCAGCTCGG CCGCCCAGCT CCCTCAGAAG AGCATACTGG AGCGGAAGGA GGTGCTCGTA
  GGTGAGGGCA GGCTCCAGGC CTGGGGCAAG GCAGGGTGTG AGGTGCCTCC CCTGCTCCCC
  GCTCTTCATT TTGTGTTCTT CTCTCTCTAG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318859	CHEV_4_130377510	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222205323					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130548906 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39279	transcription start site region 39279	585 bp upstream
Tssr39280	transcription start site region 39280	1061 bp upstream
Tssr39281	transcription start site region 39281	1127 bp upstream
Tssr39282	transcription start site region 39282	1447 bp upstream
Tssr39283	transcription start site region 39283	1517 bp upstream
Tssr39284	transcription start site region 39284	1718 bp upstream
Tssr39285	transcription start site region 39285	1788 bp upstream
Tssr39286	transcription start site region 39286	1855 bp upstream
Tssr39287	transcription start site region 39287	1881 bp upstream
Tssr39288	transcription start site region 39288	1916 bp upstream