rs222205758 SNP Detail

Summary

• ID
  rs222205758
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79974724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCCCGG TGAATTCCAG
  AGGCCGGCCT CTACAAGCCA CTCTGTCTCA AAAACAAAAC AAAAACAACA AATAAAAACA
  ACGACAAAAG CCCCCGAGAG AGCCGGGCGT GGTGGTGCAC GCCTTTAATC CCAGCACTCA
  GGAGGCAGAG GCAGGCGGAT TTCTGAGTTC GAGGCCAGCC TGGTCTACAG AGTTCCAGGA
  S
  AGCCAGGGCT ATACAGAGAA ACCCTGTCTC GAAAAAAACA AAAAACAAAC AAACAAACAA
  AAAAAGCCCC CAAGAGCCCC AAAGGGCCAA CTATGTTGGG GTTGGGAGGG GGTAGAGTAT
  ATTTATTGAC CACCTACTGT TTGTGAGGCC TTTGGATATA AACAAAACCT GACCAGCAGG
  AGCACACAGA CAGAGGAGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394691643	MGP_WTSI_15_79920953	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222205758					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394691643	MGP_WTSI_15_79920953	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79974724 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7362	CpG island 7362	246 bp proximal
Gm24204	predicted gene, 24204	1970 bp upstream
Gm31134	predicted gene, 31134	210 bp downstream
Rr304341	regulatory region 304341	1524 bp distal
Rr312104	regulatory region 312104	76 bp proximal
Syngr1	synaptogyrin 1	813 bp upstream
Tssr132156	transcription start site region 132156	675 bp upstream
Tssr132157	transcription start site region 132157	797 bp upstream
Tssr135417	transcription start site region 135417	1620 bp upstream
Tssr135418	transcription start site region 135418	1299 bp downstream