rs222209683 SNP Detail

Summary

• ID
  rs222209683
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91069244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAGGACA GCAAAGGCTA
  CAGAGAAACA CTGTCTGGAA AACCTAAATA AGTAAATAAA TAGCCAAGGC TGCAGAGAAA
  CCCTGGGAAA ACAAAACAAA GAAATAAGTA AACCCAGCAG TGGTGGCGCA TGCCTTTAAT
  CTCAGCACTT GGGAGGCAGA GGCAGGCGGA TTTCTGAGTT CAAGGCCAGC CTGGTCTACA
  R
  AGTGAGTTCC AGGACAGCCA GGGCTACACA GAGAAACCCT GTCTCGAAAA ACAAACAAAC
  AAAACAACAA CAACAACAAC AAAAAAGAAT CCTAAAAAAG TTGTAAGATA TTAACTAGGA
  AGATTATGAG GGAAAATAAA TCACTTGAGT TTGTATAGGT CCACTTCGGG GTTTTGTTAG
  CCTGTAATGA TCAGAATGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320392014	CHEV_2_91079056	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222209683					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91069244 () rs orientation: forward

Symbol	Name	Function Class
A330069E16Rik	RIKEN cDNA A330069E16 gene	542 bp downstream
Cpgi11902	CpG island 11902	1567 bp distal
Ddb2	damage specific DNA binding protein 2	1917 bp upstream
Rr397126	regulatory region 397126	1627 bp downstream
Rr560676	regulatory region 560676	1754 bp distal
Rr560677	regulatory region 560677	855 bp distal
Rr560678	regulatory region 560678	1601 bp distal
Rr560679	regulatory region 560679	1284 bp distal
Rr560680	regulatory region 560680	898 bp distal
Tssr18884	transcription start site region 18884	1754 bp downstream
Tssr18885	transcription start site region 18885	1715 bp downstream
Tssr25178	transcription start site region 25178	1978 bp upstream
Tssr25179	transcription start site region 25179	1934 bp upstream
Tssr25180	transcription start site region 25180	1910 bp upstream