rs222215007 SNP Detail

Summary

• ID
  rs222215007
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103288766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    atccgcctg cctctgcctc ccgagtgctg
  ggattaaagg cgtgcgccac cacgcccggc CCACACCTGG TCATAAGTAG AGATTTCTAT
  TTTTCAAAAA ATTGTTATTT TTGGTGTGTG TATCCTcttc cttctccctc ccctctctcc
  Y
  tccctcttcc ttccttcctc cctccctccc tccctccctc cctcccttcc ttccttcctt
  ccttccttcc ttccttcctG GGCATTGACT CTAGGGCTCT ATCATTCAGC TACACCCCAG
  CTCAGATATT CTTTTCCATC ATTCCTTCTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323161176	CHEV_9_103313897	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222215007					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103288766 () rs orientation: forward

Symbol	Name	Function Class
D9Mit242	DNA segment, Chr 9, Massachusetts Institute of Technology 242	1800 bp proximal
Gm47328	predicted gene, 47328	790 bp downstream
Gm69201	predicted gene, 69201	within coordinates
Rr198512	regulatory region 198512	1966 bp distal
Rr198513	regulatory region 198513	635 bp proximal
Rr198514	regulatory region 198514	1035 bp proximal
Rr207103	regulatory region 207103	1436 bp proximal