About   Help   FAQ
rs222215007 SNP Detail
Summary
  • ID
    rs222215007
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr9:103288766 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      atccgcctg cctctgcctc ccgagtgctg
    ggattaaagg cgtgcgccac cacgcccggc CCACACCTGG TCATAAGTAG AGATTTCTAT
    TTTTCAAAAA ATTGTTATTT TTGGTGTGTG TATCCTcttc cttctccctc ccctctctcc
    Y
    tccctcttcc ttccttcctc cctccctccc tccctccctc cctcccttcc ttccttcctt
    ccttccttcc ttccttcctG GGCATTGACT CTAGGGCTCT ATCATTCAGC TACACCCCAG
    CTCAGATATT CTTTTCCATC ATTCCTTCTT                                 
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss323161176 CHEV_9_103313897 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs222215007 SNP C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:103288766 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
D9Mit242 DNA segment, Chr 9, Massachusetts Institute of Technology 242 1800 bp proximal
Gm47328 predicted gene, 47328 790 bp downstream
Gm69201 predicted gene, 69201 within coordinates
Rr198512 regulatory region 198512 1966 bp distal
Rr198513 regulatory region 198513 635 bp proximal
Rr198514 regulatory region 198514 1035 bp proximal
Rr207103 regulatory region 207103 1436 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory