rs222225924 SNP Detail

Summary

• ID
  rs222225924
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130632707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTtgtgct agctagtttt atgtcaactt
  cacacaaact taagtcatct gagaggagaa ttaaagaaaa ttctcaattg ataaaagtgc
  tttgtaagcg agctgtaggg catttcctta attagtgatc agtggaggag ggtcttgccc
  R
  ttgtgggtga tgtcacccct gggctggtgc tcctcggttc tataagaaag caggctgagc
  aagccttggg gagcaagcca gtagacagca cttctctgtg gcttctgcat cagctcctgc
  ctccagattc ctgccctatt tgagttcctg                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319972908	CHEV_1_132601547	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222225924					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130632707 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm29427	predicted gene 29427			Intron
Pfkfb2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2			Intron
				Noncoding-Transcript-Variant
Rr417945	regulatory region 417945			1016 bp distal