rs222243675 SNP Detail

Summary

• ID
  rs222243675
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:99781066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTAGAAAT AGTTCTCTGG
  GGCGATTCCA ATCTTCGTTG TCAGCAGTCC AGTCTTCTAA CAAAACACCA ACATGAATCA
  GCAGCTGCAG TCCAGTCCAC TCGGCAGCCA CCACTCACGA ATCAGCAAGG ACTGTTTGAT
  CCAGAAGAAA ACCACAAGGC TCTGCCGAGC TACCCCGAGC CTGCAGAAGT GTCAAGAAGT
  R
  GCCAAGACAT TACAAGAAGT ACTGCATCAA GTTACTCTCT ATGAAGTCAT GGCAAGCAAA
  GATCAGCAAA TCAATGCAAG GTGAATCAAT ACTTGCATGT CATCAGTGGA GACTATGGGG
  CAGAGCAAGG CTAAGCAATG CCAGAGCCAC CTCCCACTGT CTGCAGGGTC ATAGTTACAT
  TCTTTCTAAC ATCTCAAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325082165	CHEV_15_99713616	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222243675					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:99781066 () rs orientation: forward

Symbol	Name	Function Class
Gm18890	predicted gene, 18890	447 bp upstream
Gm49494	predicted gene, 49494	within coordinates
Gm63271	predicted gene, 63271	within coordinates
Rr308871	regulatory region 308871	within coordinates