rs222245789 SNP Detail

Summary

• ID
  rs222245789
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:5746282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTGGGGC TGGCTCTCAG
  GTTCAGCGGT TCAGTCCATT ATCATCAAGG TGGGAGCAGG GGAGCATCTA GGCAGGCATG
  GTGCAGGAGG AGCTGAGAGT TCTACATCTT CATCTGAAGG CTTCTGACAG AACACGAACT
  TCTAGGCAGC TAGGATGAGG GTCTTAAGCC CATGCCCACA GTGACACACC TACTCCAACA
  R
  GGCCACACCT CCCTGATAGA GCCACTCCCT AGGCCAAGCA TTTACAAACC ATCACTGTGG
  GTGAAGACAT TTTATTAAAT AGGTGCAAAT AAAATGTGCA CAAGGCCTGT TACATGTAGT
  AGACTTTGGG TAAATCATAG GCAGTATCCT CACTCTAGAG AGCCATTGTG TACATTAATG
  TCTCAAGGCT CTATGACTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363869404	MGP_WTSI_5_5696282	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222245789					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363869404	MGP_WTSI_5_5696282	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:5746282 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15524	CpG island 15524	1576 bp distal
Gm40262	predicted gene, 40262	within coordinates
Gm43219	predicted gene 43219	576 bp upstream
Rr377521	regulatory region 377521	1908 bp upstream
Rr607035	regulatory region 607035	1725 bp distal
Rr607036	regulatory region 607036	1502 bp distal
Steap2	six transmembrane epithelial antigen of prostate 2	1704 bp upstream
Tssr50065	transcription start site region 50065	1970 bp upstream
Tssr50066	transcription start site region 50066	1835 bp upstream
Tssr50067	transcription start site region 50067	1791 bp upstream
Tssr50068	transcription start site region 50068	1743 bp upstream
Tssr50069	transcription start site region 50069	1701 bp upstream