rs222249149 SNP Detail

Summary

• ID
  rs222249149
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98937289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCCTGTA GCAGTCATTG
  CTGGCAGAAT GATACACACG TTTCTAGAGG CCAGGGGGTG GTGGCCGAGC ACACCTTTAA
  TCCCTGCACT CGGGAGGCAG AGGCAGGTGG ATTTCTGAGT TCGAGGCCAG CCTGGTCTAC
  AAAGTGAGTT CCAGGACAGC CAAGGCTATA CAGAGAAACC CTGTCTCGAA AAACCAAAAA
  W
  GAAAAAAAAA GAAAAAAGAA AAAGAATTAC TAGAGTAGGT GGCGCTGTGG GAGACCACTT
  GTGACCTAGA CTTAGCTGTA GTCCTACACC AGCAGTTCGT AGGGTTGGGG GCACAGCTCA
  AATGGCAGAA TGCTTTCCTG TGTGCTCATA GTTTGATCCC TGTGCCACAT AAGAGACACA
  GTGGTATGCT AATGTGCACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ
ss395148350	MGP_WTSI_15_98869839	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	T	T	T	A	A	T	T	T	T	T	T	T	A	A	A	A	T	T	A	T	A	T	T	T	T	T	T	A	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ
rs222249149					SNP	A	A	T	T	T	A	A	T	T	T	T	T	T	T	A	A	A	A	T	T	A	T	A	T	T	T	T	T	T	A	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395148350	MGP_WTSI_15_98869839	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98937289 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7689	CpG island 7689	698 bp proximal
Gm41399	predicted gene, 41399	1828 bp upstream
Gm62755	predicted gene, 62755	1157 bp downstream
Rr509290	regulatory region 509290	626 bp proximal
Rr509291	regulatory region 509291	1077 bp proximal
Rr509292	regulatory region 509292	1593 bp proximal
Tuba1c	tubulin, alpha 1C	1303 bp downstream