rs222252310 SNP Detail

Summary

• ID
  rs222252310
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:52271656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCCGCAGC AGCCTGGAGA
  GCCGTGCGGG ACTGAGCAGT TCCCTTCGGC ACCCTCAGCT TCGCGGGCCC GCGCCCTCGG
  GTGCGCGCTC CACGGGGCCC AAGAACTCCC GGAGCCCTGG CCGGTCCACC GAGTTGGTGC
  CGCTTTCACC AATGCTCTTC CACCTAGCTT CTGGCCCCAA CTTTCCCAAG CCGTACACAC
  R
  CGAGCGCGCG CAGACACACA CACACACACA CACACACACA CACACAATCT CTCTCTTCCT
  CCCATCCCTA GACCCCAGCT CCACTTCCCC GTGTAGTTTG AAGATGACAG ATGCCTGTAG
  ACTTTCACCA AACAAGCGGT GGGGGCAGCA GACTACAACA GTTATTTAAT TAAAAGGAAT
  TTTTTTCCCT CTAATTCTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364927578	MGP_WTSI_5_52505553	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222252310					SNP	G	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364927578	MGP_WTSI_5_52505553	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52271656 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15852	CpG island 15852	within coordinates
Gm40302	predicted gene, 40302	354 bp upstream
Gm43177	predicted gene 43177	1553 bp upstream
Gm71495	predicted gene, 71495	147 bp downstream
Gm72113	predicted gene, 72113	1083 bp upstream
Rr611383	regulatory region 611383	1094 bp distal
Rr611384	regulatory region 611384	593 bp distal
Rr611385	regulatory region 611385	408 bp proximal
Rr611386	regulatory region 611386	1379 bp proximal
Rr611387	regulatory region 611387	1564 bp proximal
Rr611388	regulatory region 611388	1912 bp proximal
Tssr50981	transcription start site region 50981	1457 bp downstream
Tssr50982	transcription start site region 50982	1491 bp downstream
Tssr50983	transcription start site region 50983	1590 bp downstream
Tssr50984	transcription start site region 50984	1619 bp downstream