rs222263889 SNP Detail

Summary

• ID
  rs222263889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:23116692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATATCTAT ATATGAATCA TATACATATA TATATATATA
  TATATATATA TATATATATA TATATATATC ACATGGATGT CATAAGGGTC TTGGGCCTGG
  R
  TCCTGCATGA AGCATGTCCT CTGTACTCTC ATGATGTGAT GTGATGGCAG TGATATTTCT
  CCATGGGTTA GCACTTCCTG TTATATTTGT TCTTTTCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325768023	CHEV_19_23213818	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222263889					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23116692 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10683	CpG island 10683	1326 bp proximal
Gm56648	predicted gene, 56648	within coordinates
Gm59174	predicted gene, 59174	815 bp upstream
Klf9	Kruppel-like transcription factor 9	1898 bp upstream
Rr405898	regulatory region 405898	1272 bp upstream
Rr545290	regulatory region 545290	347 bp proximal
Rr545291	regulatory region 545291	826 bp proximal
Rr545292	regulatory region 545292	1776 bp proximal
Tssr155578	transcription start site region 155578	779 bp upstream
Tssr155579	transcription start site region 155579	1494 bp upstream
Tssr155580	transcription start site region 155580	1612 bp upstream
Tssr155581	transcription start site region 155581	1628 bp upstream
Tssr155582	transcription start site region 155582	1651 bp upstream
Tssr155583	transcription start site region 155583	1691 bp upstream
Tssr155584	transcription start site region 155584	1736 bp upstream
Tssr155585	transcription start site region 155585	1798 bp upstream
Tssr155586	transcription start site region 155586	1855 bp upstream
Tssr158621	transcription start site region 158621	1309 bp downstream
Tssr158622	transcription start site region 158622	1639 bp downstream