rs222284488 SNP Detail

Summary

• ID
  rs222284488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31242738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GATGTAGAT ATAGATAATA TATATTAAAT
  ATGAAAGATC TCAGATTGCT TTCAGGATAG TGGCAAGACT GAGGGTGTGA AGCAGAGGTA
  CTTGGCACAG TGATTACCCA CTAAGTGCTA CTGTTTATTG AAAGCAGGCT CTCGgccggg
  Y
  gtggtggtgc acgcctttaa ttccaacact tgggaagcag aggcaggcgg atttctgagt
  tcaaggccag cctggtctac agagtgagtt ccaggacagc cagggctata cagagaaacc
  ctgtctcgaa aaaacaaaaA CAAAAAAAAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325134047	CHEV_16_31424006	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222284488					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31242738 () rs orientation: forward

Symbol	Name	Function Class
Bdh1	3-hydroxybutyrate dehydrogenase, type 1	within coordinates
Rr514474	regulatory region 514474	1630 bp distal
Rr514475	regulatory region 514475	1520 bp distal
Rr514476	regulatory region 514476	507 bp proximal
Rr514477	regulatory region 514477	1343 bp proximal
Rr514478	regulatory region 514478	1768 bp proximal
Tssr137893	transcription start site region 137893	1642 bp downstream
Tssr137894	transcription start site region 137894	1612 bp downstream
Tssr137895	transcription start site region 137895	1573 bp downstream