rs222290142 SNP Detail

Summary

• ID
  rs222290142
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3729113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTTGAAA TTCTGTGTGG
  AAGAATCAGG TTCCTGTTTA TCTTGTAGAA AGTCTAAAAC ATATTAGGTA TTAGAAATAG
  TTTCTCATAT TATATACAAA AGCCTCGGCA TTTGTTTACA CGGTTGAGAA CTTTCTTTGC
  TGTTTCTCCA TTTTGACTTT TAGGGCCGAG AGACACCCTG TGGTTGAATA TATTTGTGAG
  K
  TTTTTGTAAA TAAATATAAG AGAAATGTGT TTTTGTAGAT AAACATGAGA ATAAAACATG
  AGTTGTTCTC ATGGTGGGTG ACTGAGACAT CTCAAACATC ACCGTAGCCC TAGTCTTGCA
  GGCTTGTGAC ATCACTTATT GGTTCTAACA GCGCACAAGA GAGAGTAAGA ACTTGATGTT
  GCCTAGAACT GGGTGTTATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320205096	CHEV_2_3645348	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222290142					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3729113 () rs orientation: forward

Symbol	Name	Function Class
Fam107b	family with sequence similarity 107, member B	within coordinates
Rr367092	regulatory region 367092	271 bp downstream
Rr396754	regulatory region 396754	953 bp downstream
Tssr15911	transcription start site region 15911	891 bp downstream
Tssr22380	transcription start site region 22380	1328 bp upstream
Tssr22381	transcription start site region 22381	1268 bp upstream