rs222305090 SNP Detail

Summary

• ID
  rs222305090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:99772294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGAACA AGCTGTGAAC
  ACACAAGCCC TTGGGGAACA TTAAATATCT AACAGAGATA GTACCGTGGT ACAAAGAGGT
  GGTTATATAG AGTTACAATG TCAGTGAATA TTAGAGCTGG GAACAGAAGC CAGTTACATT
  TACCATATAG TTCTTTCTAG TGCCCTGCAA TCCTACTAAT GCTTTTCCGT TTACAGAACA
  R
  AACTACTGCC CCCTTGCTTT CTCCCTTAAA AAGGAAGTGG GGGGGGGGGG ACAAGGATTA
  TTCCTTACCT TATGCCAGAT TTCTTGTCTC CAGTTAGAAG CCAGAAGGGG GGCCAGCCAT
  GCAGTACCTC ATACAGGCTA TATTTGAAAC CTTTTGGGAG TTTGCAAGCC TTGAGGCTCA
  TCCATGCATA TCGAATGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404170210	MGP_WTSI_X_97924027	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222305090					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404170210	MGP_WTSI_X_97924027	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:99772294 () rs orientation: forward

Symbol	Name	Function Class
Gdpd2	glycerophosphodiester phosphodiesterase domain containing 2	1185 bp upstream
Gm52438	predicted gene, 52438	within coordinates
Kif4	kinesin family member 4	1416 bp downstream
Rr692772	regulatory region 692772	764 bp proximal
Rr692773	regulatory region 692773	1373 bp proximal
Rr692774	regulatory region 692774	1509 bp proximal
Tssr161618	transcription start site region 161618	1130 bp upstream
Tssr161619	transcription start site region 161619	1148 bp upstream
Tssr161620	transcription start site region 161620	1229 bp upstream
Tssr161621	transcription start site region 161621	1292 bp upstream
Tssr161622	transcription start site region 161622	1431 bp upstream
Tssr161623	transcription start site region 161623	1438 bp upstream
Tssr161624	transcription start site region 161624	1468 bp upstream
Tssr161625	transcription start site region 161625	1490 bp upstream