rs222310407 SNP Detail

Summary

• ID
  rs222310407
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:85697347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCGCATA GTGCGCTGCC
  CGCCGGGAGG GGCTGCGCGA CTGAGTCTAG CTGGATGCTT GCTATTTGCT ATAGAAGTTT
  CAGGGGCGGG GGTGGGGGGC TCGCCCTCCC ACCCACCCAC CCACAGCCGC ACACTCTACA
  CACTGGCGTG CAAGGTTGAG TCAAGTGTCC AGGAAAGGGT AGGGGGAATC CGCAGCAGAG
  M
  GCCAGCCTGG CCTGGCACCG GTGCCACTGT GAGAACTTTT TCTTTGTTGG TTTGGAAAAT
  GTTTGGAATG GAGGTCCAAG AGACGGAGGA AGAAAAATTT TAAATAAAAT AAAAGAAAAA
  AAATTAAATA AAGGGTGGTG TTGGTGGGAG TAAAAGCCAA GAGGTGGAGA GCAACCAAAT
  ACAAAAAAGG AGAGAGGCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss397172064	MGP_WTSI_16_85900704	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs222310407					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397172064	MGP_WTSI_16_85900704	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85697347 () rs orientation: forward

Symbol	Name	Function Class
Adamts5	ADAM metallopeptidase with thrombospondin type 1 motif 5	within coordinates
Cpgi8391	CpG island 8391	within coordinates
Cpgi8392	CpG island 8392	172 bp proximal
Gm46558	predicted gene, 46558	within coordinates
Rr319329	regulatory region 319329	947 bp distal
Rr325517	regulatory region 325517	within coordinates
Tssr141913	transcription start site region 141913	1103 bp upstream
Tssr141914	transcription start site region 141914	207 bp upstream
Tssr141915	transcription start site region 141915	179 bp upstream
Tssr141916	transcription start site region 141916	150 bp upstream
Tssr141917	transcription start site region 141917	144 bp downstream
Tssr141918	transcription start site region 141918	222 bp downstream
Tssr141919	transcription start site region 141919	260 bp downstream
Tssr141920	transcription start site region 141920	597 bp downstream
Tssr141921	transcription start site region 141921	659 bp downstream
Tssr141922	transcription start site region 141922	888 bp downstream
Tssr141923	transcription start site region 141923	1333 bp downstream