rs222310584 SNP Detail

Summary

• ID
  rs222310584
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53615748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAGATACT ATGTAATTAC
  CAACTCCTCC TGAAAGGGAA ACCACAAAGA AAGACAGTGT GCAGACTTTT TAAAAGGAAG
  ATTCTCAGCA GGAGGGTGAT GGCAAGCAAA AGGCTGGGCA CTTCTTGAGC TGTGTGGATT
  TCTGGGTTCT GAGCTCACCT GCTGTGTGAT TTGGGCAGTG CAAAGAGAGG CAGACAGAGA
  K
  GTCTGTGCAA TTCTTAGGAG GAATTTTCTA TAGTGAGGGG GCAAGGAGAG GGAGAGAGGA
  GACCATGATT TCTGTGAGTT TAACAGTGAG GGGGCTGGAC GGGAATGGAC AGCAGCTACA
  GGTCCTCTAA CATTAGGCAG GGGACCTAGG GCTTCAGTCA CGGGGCTAGA TCTTCCCAGC
  TCAGTTCGTG CCTCGGCCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324342367	CHEV_13_53557081	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222310584					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53615748 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5621	CpG island 5621	191 bp proximal
Gm33763	predicted gene, 33763	357 bp upstream
Rr388456	regulatory region 388456	within coordinates
Rr406701	regulatory region 406701	1492 bp proximal
Rr480050	regulatory region 480050	within coordinates
Rr480051	regulatory region 480051	317 bp proximal
Rr480052	regulatory region 480052	410 bp proximal