rs222318778 SNP Detail

Summary

• ID
  rs222318778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110368908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTACTGGAG TAAAGCTGAC
  AGCAGTATGC CCAGTATGGT CCTGAGCAGT TGTGGGCTGA GCAGGGACCT CTTTAAGAAG
  ACATGCTTTG TACCCTAGGT ACAAAGAGTC AATGCCAAGT TGCAGGCAGC CGTGGAGCCT
  CTGTCTGTTC CAGCTCCATC ATCACCTTCA CCTCAGAGGA AGTGTTGACT GCAGACTGGG
  R
  GAGTCCGCCT GTCCAGGTTG CAACTTGGAG GGACTTGGCT TGCTCTGAAG AGGCTGGTAG
  TACCTGGTCC TCTCTAGGTG GGCTGGTGTG AGACTCTAAC CTTTCAGGCC TATCCATCCT
  TAGCCCAGCC TCAAACCTGA AATCCTGAAT ACAGGCGGAC TGGCTCTCAC CAGCATTGTG
  TTCTTTGAGA TAAAAGGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322398782	CHEV_7_117913215	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222318778					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110368908 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	within coordinates
B430319F04Rik	RIKEN cDNA B430319F04 gene	356 bp upstream
Cpgi19579	CpG island 19579	468 bp distal
Rr653308	regulatory region 653308	1485 bp distal
Rr653309	regulatory region 653309	780 bp distal
Rr653310	regulatory region 653310	80 bp distal
Rr653311	regulatory region 653311	961 bp proximal
Tssr68503	transcription start site region 68503	1601 bp downstream
Tssr68504	transcription start site region 68504	1574 bp downstream
Tssr68505	transcription start site region 68505	1545 bp downstream
Tssr68506	transcription start site region 68506	1508 bp downstream
Tssr68507	transcription start site region 68507	1067 bp downstream
Tssr68508	transcription start site region 68508	854 bp downstream
Tssr68509	transcription start site region 68509	925 bp upstream
Tssr74265	transcription start site region 74265	336 bp upstream