rs222320251 SNP Detail

Summary

• ID
  rs222320251
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46141307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTCCTGG AAAACTGGGA
  CACTCTGGGT TCAACCGTTA GTCAGCTGCA GGAACGGCTG GGCCCATTGA CTCGGGACTT
  CTGGGATAAC CTGGAGAAAG AAACAGATTG GGTGAGACAG GAGATGAACA AGGACCTAGA
  GGAAGTGAAA CAGAAGGTGC AGCCCTACCT GGACGAATTC CAGAAGAAAT GGAAAGAGGA
  W
  GTGGAGCTCT ACCGCCAGAA GGTGGCGCCT CTGGGCGCCG AGCTGCAGGA GAGCGCGCGC
  CAGAAGCTGC AGGAGCTGCA AGGGAGACTG TCCCCTGTGG CTGAGGAATT TCGCGACCGC
  ATGCGCACAC ACGTAGACTC TCTGCGCACA CAGCTAGCGC CCCACAGCGA ACAGATGCGC
  GAGAGCCTGG CCCAGCGCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377451219	MGP_WTSI_9_46038092	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222320251					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377451219	MGP_WTSI_9_46038092	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46141307 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	within coordinates
Cpgi21701	CpG island 21701	within coordinates
Gm67994	predicted gene, 67994	1712 bp downstream
Rr195182	regulatory region 195182	1107 bp distal
Rr195183	regulatory region 195183	307 bp distal
Rr206362	regulatory region 206362	within coordinates
Tssr84839	transcription start site region 84839	1635 bp downstream
Tssr84840	transcription start site region 84840	1295 bp downstream
Tssr84841	transcription start site region 84841	1165 bp downstream
Tssr84842	transcription start site region 84842	1063 bp downstream
Tssr84843	transcription start site region 84843	1029 bp downstream
Tssr84844	transcription start site region 84844	855 bp downstream
Tssr84845	transcription start site region 84845	818 bp downstream
Tssr84846	transcription start site region 84846	763 bp downstream
Tssr84847	transcription start site region 84847	101 bp downstream
Tssr84848	transcription start site region 84848	23 bp downstream
Tssr84849	transcription start site region 84849	within coordinates
Tssr84850	transcription start site region 84850	32 bp upstream
Tssr84851	transcription start site region 84851	76 bp upstream
Tssr84852	transcription start site region 84852	95 bp upstream
Tssr84853	transcription start site region 84853	193 bp upstream
Tssr84854	transcription start site region 84854	223 bp upstream
Tssr84855	transcription start site region 84855	242 bp upstream
Tssr84856	transcription start site region 84856	258 bp upstream
Tssr84857	transcription start site region 84857	376 bp upstream
Tssr84858	transcription start site region 84858	395 bp upstream
Tssr89313	transcription start site region 89313	34 bp upstream
Tssr89314	transcription start site region 89314	6 bp upstream
Tssr89315	transcription start site region 89315	within coordinates
Tssr89316	transcription start site region 89316	27 bp downstream
Tssr89317	transcription start site region 89317	39 bp downstream
Tssr89318	transcription start site region 89318	61 bp downstream
Tssr89319	transcription start site region 89319	75 bp downstream
Tssr89320	transcription start site region 89320	84 bp downstream
Tssr89321	transcription start site region 89321	106 bp downstream
Tssr89322	transcription start site region 89322	152 bp downstream
Tssr89323	transcription start site region 89323	217 bp downstream
Tssr89324	transcription start site region 89324	267 bp downstream
Tssr89325	transcription start site region 89325	291 bp downstream
Tssr89326	transcription start site region 89326	331 bp downstream
Tssr89327	transcription start site region 89327	452 bp downstream