rs222323639 SNP Detail

Summary

• ID
  rs222323639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130545201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACTGAGG GAGCGCGCTG
  AGATGGACCC AGCCTGGGGA TGGATGTGTG ACCACTGTTC CAGGCTCCTG CTCCTTCCTG
  AGCCGCCTGA CTTAGCTCTG CCGCTAGTCT CCCTCCAACT CTGCTTTAAG CCTCTCCCTC
  AGGAAACTGG TGCCCTCCTC TAAAATGTCA CTGTTCTCAG GAGGCAGAGG CAGAGGCAGG
  Y
  GGATTTCTGA GTTCAAGGCC AGCCTGGTCG ACAAAGTGAG TTCCAGGACA GCCAGGGCTA
  CACAGAGAAA CCTTGTCTTG AAAAAACAAA CAAACAAAAA CCCCCAAAAC AAACAAAAAC
  CAACCAACCA AACAAAAATG TCACTGTTTC CTTCTCTCGA CCCTCCCTGG CCATGGCCTC
  TCCTCACATC TCCTAACTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318836	CHEV_4_130373805	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222323639					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130545201 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39263	transcription start site region 39263	1037 bp downstream
Tssr39264	transcription start site region 39264	979 bp downstream
Tssr39265	transcription start site region 39265	701 bp upstream
Tssr39266	transcription start site region 39266	723 bp upstream
Tssr39267	transcription start site region 39267	741 bp upstream
Tssr39268	transcription start site region 39268	765 bp upstream
Tssr39269	transcription start site region 39269	812 bp upstream
Tssr39270	transcription start site region 39270	837 bp upstream
Tssr39271	transcription start site region 39271	876 bp upstream
Tssr39272	transcription start site region 39272	898 bp upstream
Tssr39273	transcription start site region 39273	958 bp upstream
Tssr39274	transcription start site region 39274	1000 bp upstream
Tssr39275	transcription start site region 39275	1016 bp upstream
Tssr39276	transcription start site region 39276	1052 bp upstream
Tssr39277	transcription start site region 39277	1068 bp upstream
Tssr39278	transcription start site region 39278	1081 bp upstream
Tssr43599	transcription start site region 43599	799 bp downstream
Tssr43600	transcription start site region 43600	822 bp downstream
Tssr43601	transcription start site region 43601	879 bp downstream