rs222324144 SNP Detail

Summary

• ID
  rs222324144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:51447467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTCACTC GGTCCCTCCC
  AGAAGGACTT TTAGTCCAAG TACCACCCCG GATGCCACAA GCCTTGGGAT CCCGCGCCTA
  GTGAGAGGTG GTGCTTAAAG AACCCCGCTG TTTATCTCCC CGGCCTTCAA GATCCGGGCA
  AGGAGGTGGG TGGAGCCCCG CTTTGGCGCG CTCCGAGACG CAGAGAGGCC TCCGCGGTCC
  Y
  TCCTGCCCGC CTTCCCCCCC CTCCCCCCAG CCAGGAGACC CCCTGGGCGC CACGCCGCGG
  ACGGTGAGCA TTGCGCGCGC CGCCCCCCGC AGGACGCGTT CCCGGCGGGC CCCGCGCGGC
  CAGGGCGTGG GCGGTGCTCC CCCTCCCCCC CGGCGGAGCT GCCCGCGCCC CCTCCCCTCG
  GATGTGGCTG AACCGAAGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368292365	MGP_WTSI_6_51420486	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222324144					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368292365	MGP_WTSI_6_51420486	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:51447467 () rs orientation: forward

Symbol	Name	Function Class
Cbx3	chromobox 3	129 bp upstream
Cpgi17402	CpG island 17402	within coordinates
Gm67572	predicted gene, 67572	436 bp downstream
Hnrnpa2b1	heterogeneous nuclear ribonucleoprotein A2/B1	593 bp upstream
Rr379347	regulatory region 379347	within coordinates
Rr630213	regulatory region 630213	1047 bp distal
Rr630214	regulatory region 630214	within coordinates
Rr630215	regulatory region 630215	219 bp proximal
Rr630216	regulatory region 630216	1412 bp proximal
Tssr56443	transcription start site region 56443	1025 bp downstream
Tssr56444	transcription start site region 56444	270 bp downstream
Tssr56445	transcription start site region 56445	137 bp downstream
Tssr56446	transcription start site region 56446	71 bp downstream
Tssr56447	transcription start site region 56447	57 bp downstream
Tssr56448	transcription start site region 56448	9 bp downstream
Tssr56449	transcription start site region 56449	7 bp upstream
Tssr56450	transcription start site region 56450	23 bp upstream
Tssr56451	transcription start site region 56451	60 bp upstream
Tssr56452	transcription start site region 56452	121 bp upstream
Tssr56453	transcription start site region 56453	146 bp upstream
Tssr60947	transcription start site region 60947	633 bp upstream
Tssr60948	transcription start site region 60948	610 bp upstream
Tssr60949	transcription start site region 60949	542 bp downstream