rs222325789 SNP Detail

Summary

• ID
  rs222325789
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152778541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCGGCCC CGCGGCCCCG
  CGGGTGCTGG CGGTCGCCGC CATCTTCCTC TCCTCCGACT CCTCCTCGCT TGGCGCGGGG
  TGGGGGGGGG GGAGAGTGAG TGAGGCGAGG GGGAGGGAGT TGGGGGGAGC GGCTCCGGCA
  GCGGCTGCGG CTCTGGCCTG TGGGGCGCAG GGACGCTCCG GCTCCGGAGG GGGGGGGGAA
  R
  AAGAAGGGGA AAGGGGCGGG GAAAGAGGAG GGGAGAAGCA GAGGAAGGAA GTCGGGTTCG
  CTCTCGCGAG ACTTCAGCAG CGCCGGTCCC TCTGGGTGCT TTCCGCCGCT CTGTAGCGCT
  CCCTCTTGGG ATCGGCGAGC GGTGCGGTGC CCGCGCGCCG GCCGAACGAT CCGGTGCTGG
  TGCCCGGCGG CCTCCTAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss351959049	MGP_WTSI_1_154749920	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs222325789					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351959049	MGP_WTSI_1_154749920	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152778541 () rs orientation: forward

Symbol	Name	Function Class
Cpgi860	CpG island 860	within coordinates
Cpgi861	CpG island 861	1896 bp proximal
D1Mit502	DNA Segment, Chr 1 Massachusetts Institute of Technology 502	1029 bp distal
Gm70930	predicted gene, 70930	1267 bp upstream
Rr396386	regulatory region 396386	163 bp downstream
Rr396387	regulatory region 396387	342 bp upstream
Rr396388	regulatory region 396388	1743 bp upstream
Rr420557	regulatory region 420557	179 bp distal
Rr420558	regulatory region 420558	within coordinates
Rr420559	regulatory region 420559	777 bp proximal
Rr420560	regulatory region 420560	1278 bp proximal
Smg7	SMG7 nonsense mediated mRNA decay factor	144 bp upstream
Tssr9437	transcription start site region 9437	54 bp upstream
Tssr9438	transcription start site region 9438	107 bp upstream
Tssr9439	transcription start site region 9439	1013 bp upstream
Tssr14242	transcription start site region 14242	121 bp upstream
Tssr14243	transcription start site region 14243	40 bp upstream
Tssr14244	transcription start site region 14244	11 bp upstream
Tssr14245	transcription start site region 14245	273 bp downstream
Tssr14246	transcription start site region 14246	298 bp downstream